FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519606
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20170.38817873542645775No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19750.380095687886591No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14940.28752554820383136No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14460.2782877795868408No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13810.2657783012513327No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11890.2288272267833705No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11250.21651020196071638No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9630.18533273287837324No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9560.18398555828839544No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9220.17744213885136045No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9220.17744213885136045No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT9110.17532515020996678No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG9030.17378552210713502No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8700.16743455618295403No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7000.1347174589977791No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6900.13279292386923938No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6780.13048348171499174No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6490.1249023298422266No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6140.11816645689233765No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5980.11508720068667413No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5640.10854378124963915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)