FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519606
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25000.4811337821349253No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23860.45919408166957265No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21160.4072316331990008No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16570.31889547079902847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15280.2940689676408664No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14400.277133058509717No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13650.26269904504566927No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13230.2546159975058025No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11610.22343852842345932No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10190.19611012959819557No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10060.19360823393109394No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA9760.18783462854547484No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9740.1874497215197669No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA9490.18263838369841764No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9230.17763459236421442No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8140.15665715946313166No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7770.1495363794875348No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7700.148189204897557No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7460.14357032058906172No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7140.13741180817773468No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7000.1347174589977791No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6690.128751400099306No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6410.12336270173939484No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6230.11989853850802339No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5770.11104567691674076No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5400.10392489694114387No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC5340.10277017586402004No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5290.1018079082997502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)