FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495536
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21660.437102450679668No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20010.40380517258080145No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15660.316021439411062No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13060.263553001194666No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12550.2532611152368345No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11400.2300539214103516No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9290.1874737657808918No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8650.17455845791224048No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8200.16547738206709503No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7870.15881792644732168No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6660.13439992250815277No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6580.13278550902457137No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6560.13238190565367602No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6140.1239062348648736No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5900.11906299441412935No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5160.10412966969100125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)