FastQCFastQC Report
Wed 31 May 2023
EGAF00007959243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466243
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27100.5812419703888316No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19880.42638709857306173No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16390.3515334278477103No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11150.23914568154374433No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11040.23678639679308855No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7370.15807207829393685No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6590.14134260460746864No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5680.12182488530658907No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4990.10702573550702102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)