FastQCFastQC Report
Sun 21 May 2023
EGAF00007959247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450368
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45271.005177987778883No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26110.5797481170953531No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19300.4285384396759983No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15540.34505115816399035No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10680.23713940599687366No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7010.15565049026573824No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5720.1270072474065653No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5270.11701541850220264No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4730.10502522381696745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)