FastQCFastQC Report
Wed 31 May 2023
EGAF00007959248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401632
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11640.28981754441877144No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11310.28160106764401244No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10180.25346585929408016No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9100.2265755716675962No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9080.2260776033782169No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9000.22408573022069952No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7690.1914688072663533No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7350.18300334634690463No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5290.13171261254083338No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5120.12747988208110908No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5110.12723089793641942No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4550.1132877858337981No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4410.10980200780814277No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4380.10905505537407377No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4330.10781013465062544No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4310.10731216636124612No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4150.10332842004621146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)