FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426013
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11930.2800384025839587No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11830.2776910563762139No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10320.24224612863926687No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9940.23332621304983653No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9510.22323262435653374No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9440.22158948201111234No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7760.18215406572099913No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7560.17745937330550945No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6300.14788281108792453No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5920.13896289549849417No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5730.134502937703779No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4930.11572416804182031No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4770.1119684141094286No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4700.11032527176400721No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4620.10844739479781135No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4590.1077431909354879No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4380.10281376389922373No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4320.10140535617457684No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4290.10070115231225338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)