FastQCFastQC Report
Wed 31 May 2023
EGAF00007959253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407069
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39780.9772299045125029No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25900.6362557699063304No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22670.5569080426168537No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10580.25990679712775966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10430.25622191815146816No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9000.22109273857748932No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8990.2208470799790699No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7950.1952985857434489No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5790.14223632848485146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5750.14125369409117372No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5430.1333926189417519No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5370.13191866735123528No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5350.13142735015439644No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5150.12651417818600777No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5140.12626851958758833No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4690.11521388265871388No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4460.10956373489506693No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4190.10293095273774225No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4170.10243963554090339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)