FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386165
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG27530.7129076948972589No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG16350.42339414498983596No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15900.4117410951277304No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15630.40474926521046706No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15360.39775743529320373No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC15210.39387308533916854No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13600.35218106249919073No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12110.31359651962244117No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9810.2540364869939016No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9280.24031178382297722No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9280.24031178382297722No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9200.23824013051415843No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9050.23435578056012324No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8990.23280204057850917No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7950.2058705475638652No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7450.19292271438374786No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7300.1890383644297127No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7280.188520451102508No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7050.18256444783965403No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG7020.181787577848847No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6930.17945696787642587No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6630.17168826796835548No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG6390.1654733080418992No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6290.16288374140587572No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6140.15899939145184053No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6090.1577046081338288No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG6030.1561508681522147No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6010.15563295482501005No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6000.15537399816140768No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5980.154856084834203No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5790.14993590822575842No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5730.14838216824414435No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5600.14501573161731382No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5540.14346199163569978No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5440.14087242499967628No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5430.14061346833607397No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5400.13983659834526693No Hit
GGTCAGTGGATCCAGTTCGCCGCGTGCTGCACGAGCGGTCAGGT5110.1323268551007989No Hit
CAGTGCACGCAGGCCTTCAGCGATGTTTTCGAACTTTGGGTTGG4990.12921937513757073No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4890.12662980850154726No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4850.12559398184713788No Hit
GGTGTTGACGTGGTACGGGTTGTCATAACCCTGCTGTTCCTGGC4740.12274545854751207No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4660.12067380523869331No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG4630.11989693524788628No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC4550.1178252819390675No Hit
CAGCGCGCGCAGGCCCTCAGCGATGTTTTCGAACTTCGGGTTGG4470.11575362863024874No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4180.1082438853857807No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4170.10798492872217834No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT3970.10280579545013141No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT3910.10125205546851734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)