FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388319
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36920.9507647063368004No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT27790.7156487320991247No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23470.6043999907292715No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17800.45838601768133935No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16460.42387830623791267No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC16270.41898542177951636No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG15580.40121652558849813No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14380.3703140974302056No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10610.2732289689662365No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10030.25829279535639516No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9890.254687512071261No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9790.2521123097247366No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9760.25133974902077927No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9660.24876454667425493No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC9520.2451592633891208No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7770.2000932223249442No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7750.1995781818556393No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7700.1982905806823771No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7620.19623041880515762No Hit
GATGGTGAACGTAACAACCAGGTTCTGGAAG7310.18824729153093203No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7240.18644464988836498No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7110.18309688683788328No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6960.17923408331809673No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6920.17820400237948697No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6440.16584303111616994No Hit
TCCGCGGCCGAAAAAACCAAAGGTAACGCGA6190.159405025249859No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG6100.15708734313798706No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6100.15708734313798706No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6100.15708734313798706No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6070.15631478243402977No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6040.15554222173007243No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6030.15528470149542No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC6000.1545121407914627No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5930.15270949914889562No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG5820.1498767765677188No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5810.14961925633306639No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5650.14549893257862737No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5600.14421133140536518No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5580.14369629093606032No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5480.14112108858953593No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5310.13674324460044449No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC5130.1321078803767006No Hit
GGTCAAGGTCAACAGGGTTACTACCCGATCT5060.13030523873413352No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5050.1300477184994811No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG4860.1251548340410848No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4810.12386723286782259No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4790.12335219239851772No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4750.12232211145990796No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4690.12077699005199334No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4520.11639914606290189No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG3950.10172049268771294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)