FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374931
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25330.6755909754061414No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG16260.43367979708266324No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15580.41554312660196147No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15170.4046077811650677No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14880.3968730246365331No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14840.3958061616670801No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13050.34806404378405625No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11770.3139244287615588No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9370.24991265059437603No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9190.24511176723183734No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9050.24137774683875166No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9020.24057759961166186No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8970.23924402089984556No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8870.23657686347621296No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8320.22190749764623355No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7380.19683621786408698No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7140.19043504004736872No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6910.1843005779730137No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG6900.18403386223065044No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6870.18323371500356067No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6830.1821668520341076No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6340.16909778065830777No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6100.16269660284158952No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG5860.15629542502487126No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5820.15522856205541818No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5810.15496184631305493No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5740.15309483611651212No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5640.15042767869287949No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5580.14882738423869993No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG5540.14776052126924688No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5460.14562679533034079No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5450.14536007958797753No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5300.1413593434525286No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC5280.1408259119678021No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5250.1400257647407123No Hit
GGTCAGTGGATCCAGTTCGCCGCGTGCTGCACGAGCGGTCAGGT5220.1392256175136225No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5220.1392256175136225No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4800.12802355633436552No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4770.12722340910727573No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT4650.1240228201989166No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4540.12108894703292071No Hit
CAGTGCACGCAGGCCTTCAGCGATGTTTTCGAACTTTGGGTTGG4540.12108894703292071No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4400.11735492663983507No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4350.11602134792801876No Hit
CAGCGCGCGCAGGCCCTCAGCGATGTTTTCGAACTTCGGGTTGG4280.11415433773147592No Hit
GGTGTTGACGTGGTACGGGTTGTCATAACCCTGCTGTTCCTGGC4110.10962017011130049No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT3950.1053527182334883No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA3850.10268556080985569No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG3780.10081855061331285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)