FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395599
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT14260.36046602746720796No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC12840.32457109345574686No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9720.24570335112070557No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9090.2297781339184376No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8830.22320582205718414No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7160.18099135740990244No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6370.1610216406007093No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6300.15925217202267952No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5750.14534920462387418No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5480.1385241115371879No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5420.13700742418459097No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5120.1294239874216062No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4900.12386280046208409No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4700.11880717595342759No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4610.11653214492453216No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4360.11021261428871154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)