FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375943
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13580.3612249729347268No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC12240.32558127162894374No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9390.24977190691142007No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8920.23727001167730216No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7860.2090742479578021No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6850.18220847309299548No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6210.16518461575291998No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6000.1595986625632077No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5370.14284080299407093No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5210.13858483865905202No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5170.1375208475752973No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4810.12794492782150488No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4600.12235897463179259No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4500.11969899692240579No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4070.10826109277204257No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4000.1063991083754718No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG3980.10586711283359444No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT3870.10294113735326899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)