FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375943
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37260.99110769451752No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14790.39341070321830707No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14680.39048472773798154No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG13700.36441694618599096No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12470.3316992203605334No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9510.25296388016268423No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8440.22450211867224554No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7820.2080102568740474No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6800.18087848423830208No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6270.16678060237855205No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC5710.151884727205986No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5360.14257480522313223No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4950.13166889661464637No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4540.12076298800616052No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4220.11225105933612277No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4130.10985707939767464No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4130.10985707939767464No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4130.10985707939767464No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC3940.10480312174983974No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG3900.10373913066608503No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA3810.1013451507276369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)