FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398295
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT14750.3703285253392586No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC12880.32337840043184074No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10460.26261941525753524No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9160.22998029099034634No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8590.21566929035011737No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7490.18805156981634216No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6580.16520418282930993No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5960.14963783125572755No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5920.1486335505090448No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5810.1458717784556673No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5810.1458717784556673No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5220.13105863744209695No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4670.11724977717520932No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4640.11649656661519728No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4590.11524121568184387No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4510.11323265418847839No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4470.11222837344179565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)