FastQCFastQC Report
Sun 21 May 2023
EGAF00007959265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398295
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15900.39920159680638717No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT15820.3971930353130217No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG14640.36756675328588106No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13470.338191541445411No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10700.2686450997376316No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9940.24956376555065968No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8880.22295032576356721No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8540.21441393941676398No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7840.19683902634981607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6750.16947237600271156No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC6120.15365495424245848No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5870.1473781995756914No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5350.1343225498688158No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5080.1275436548287074No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4760.1195094088552455No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4760.1195094088552455No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4480.11247944362846635No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4470.11222837344179565No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4180.10494733802834581No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4140.1039430572816631No Hit

[OK]Adapter Content

Adapter graph