FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429243
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30010.6991377844251391No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC28520.6644255118895358No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25320.5898756648332064No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23080.5376907718937758No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG21410.49878507046125387No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG20420.47572121152820196No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16890.3934834114941886No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16850.3925515384059845No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14590.3399007089224519No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14050.3273204222316963No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13320.3103137383719711No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12220.2846872284463579No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10170.23692873267589687No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9330.2173593978236104No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7980.18590868109672143No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7970.1856757128246704No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6950.1619129490754654No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6940.1616799808034144No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6870.16004920289905716No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT6670.15538983745803658No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6100.1421106459511279No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5920.13791721705420937No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5760.13418972470139293No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5740.13372378815729086No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5420.12626880345165792No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5310.1237061524590966No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4820.11229070712859615No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4690.10926211959193279No Hit
TCCGTAGGCGACGGTGAAACTGTTGAATTTG4670.10879618304783072No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4630.10786430995962659No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4580.10669946859937145No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4550.10600056378321837No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4520.10530165896706527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)