FastQCFastQC Report
Sun 21 May 2023
EGAF00007959830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428359
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63881.491272507406171No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20310.47413501292140475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18050.4213755284702784No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17500.4085358309268627No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17080.39873097098461807No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15130.3532084069670533No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11490.2682329541342659No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10920.25492635849836237No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10530.2458218456948494No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9750.22761282008782352No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9560.22317728820918903No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8470.19773134216860155No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8130.18979407459630823No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8020.18722613508762512No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7840.1830240522552345No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7020.16388123046323294No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6420.14987428768859765No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5880.13726803919142588No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5880.13726803919142588No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG5660.1321321601740596No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT5560.12979766971162038No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5140.11999280976937568No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5020.11719142121444863No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5000.11672452312196079No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4700.10972105173464315No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4520.10551896890225254No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4450.1038848255785451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)