FastQCFastQC Report
Wed 31 May 2023
EGAF00007959832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447456
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58031.2968872917113639No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20760.4639562325681184No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19520.43624401058428086No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18500.413448473145963No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17230.3850657941786455No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15830.3537778016162483No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12030.26885325037545593No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11830.26438353715225626No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11820.26416005149109634No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11040.2467281699206179No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9530.21298183508546092No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9360.20918257884574126No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9340.20873560752342127No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9020.20158406636630197No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8170.18258778516770366No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8070.18035292855610385No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6850.1530876778945863No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6250.13967853822498746No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT5710.12761031252234856No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5660.12649288421654867No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5320.11889437173710936No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG5250.11732997210898949No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5130.11464814417506972No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5120.11442465851390976No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5090.11375420153042981No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5080.11353071586926983No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4880.10906100264607022No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4670.10436780376171063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)