FastQCFastQC Report
Wed 31 May 2023
EGAF00007959833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536133
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16820.31372812343205886No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16250.30309643316117457No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15930.29712776493892373No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15790.294516472591689No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15510.28929388789721955No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14670.2736261338138111No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13690.25534708738316797No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13640.2544144829734413No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13530.25236275327204255No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG12110.22587678803580458No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11920.22233289127884312No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11360.2118877218899042No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11050.2061055745495987No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10450.19491432163287842No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG10190.19006477870229962No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT10170.18969173693840893No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9830.18335002695226743No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9090.1695474816883124No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8420.15705058259797475No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8160.15220103966739595No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8100.15108191437572394No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7870.14679193409098115No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7180.13392199323675283No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7030.13112418000757275No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6500.12123857326446982No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6370.11881380179918043No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG6360.11862728091723508No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5800.10818211152829615No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5630.10501125653522539No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5580.1040786521254987No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG5430.10128083889631863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)