FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416509
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12220.2933910191616508No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10910.26193911776216117No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10270.24657330333798308No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9580.23000703466191608No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8570.20575785877376No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8130.19519386135713754No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8110.19471367965638198No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7850.1884713175465596No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6220.14933650893498102No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5850.14045314747100301No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5640.13541123961306958No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5630.1351711487626918No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5410.12988915005438056No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5290.12700805984984717No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5170.12412696964531379No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4940.11860488008662477No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4900.11764451668511365No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4860.11668415328360252No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4460.1070805192684912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)