FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416509
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25770.6187141214235466No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21600.5185962368160112No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11880.28522793024880616No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10440.2506548477944054No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10300.24729357588911643No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10210.2451327582357164No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8510.20431731367149328No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7920.1901519534992041No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7790.18703077244429292No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7320.17574650247653711No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6420.15413832594253665No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6380.15317796254102553No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6110.1466955095808254No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5920.1421337834236475No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5600.13445087621155846No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5600.13445087621155846No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5540.13301033110929175No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5290.12700805984984717No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4800.11524360818133582No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4700.11284269967755799No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4410.10588006501660227No Hit

[OK]Adapter Content

Adapter graph