FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423230
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12910.3050350873047752No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10570.2497460009923682No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10400.24572927249958654No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10310.24360276917987858No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8490.2006001464924509No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8250.19492947097322968No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8180.19327552394679015No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8010.18925879545400845No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6160.14554733832667816No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5910.1396403846608227No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5750.13585993431467525No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5670.1339697091416015No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5630.13302459655506463No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5570.1316069276752593No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5240.12380974883633013No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5130.12121068922335373No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5070.11979302034354843No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4890.11554001370413251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)