FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473635
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24040.5075638413546296No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19580.41339850306670745No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15980.3373906066908062No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7800.16468377548111943No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7270.15349372407022285No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6770.1429370717957921No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6160.13005795602098663No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6110.12900229079354356No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5410.11422297760934053No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA5130.1083112523356593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)