FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503019
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17520.34829698281774646No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16550.3290134169882251No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14030.278915905761015No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13930.2769279092837447No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10260.20396843856792685No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8630.1715640959884219No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7990.15884091853389234No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7880.1566541224088951No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7220.1435333456589115No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7120.14154534918164124No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6180.12285818229530096No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5940.1180869907498524No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5190.10317701717032558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)