FastQCFastQC Report
Wed 31 May 2023
EGAF00007959844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503019
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36450.7246247159650032No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35230.7003711589423064No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15910.31629023953369556No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13640.27116271949966103No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12280.24412596740878575No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8620.1713652963406949No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8550.16997369880660573No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8430.16758810303388144No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6640.13200296609074408No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5830.11590019462485512No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5830.11590019462485512No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5710.11351459885213083No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5550.11033380448849846No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5310.10556261294304987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)