FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506255
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36460.7201904178724161No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34310.6777217015140591No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16070.31742896366455636No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13650.269626966647243No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13410.2648862727281706No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8570.16928227869354376No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8350.16493664260106072No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8260.16315888238140858No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6220.12286298406929315No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6020.11891240580339947No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5880.11614700101727392No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5620.11101124927161213No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5370.10607302643924504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)