FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400481
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41061.025267116292658No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22650.5655699021926134No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14740.3680574109633166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12230.3053827772104045No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9670.24145964477715548No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9000.2247297624606411No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5340.13333965905998038No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5150.12859536407470018No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4490.11211518149425316No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4310.10762058624504034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)