FastQCFastQC Report
Wed 8 May 2024
EGAF00007959850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450210
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT14130.3138535350169921No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12910.2867550698562893No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12070.26809711023744476No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9940.2207858554896604No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8000.17769485351280515No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG7010.1557051153905955No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6930.15392816685546745No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6920.15370604828857645No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6630.14726460984873727No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6550.14548766131360918No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6540.1452655427467182No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC6480.14393283134537216No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6270.13926834144066103No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5920.13149419159947578No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5830.12949512449745676No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5320.11816707758601543No Hit
GTCTTCAGACGGGTACGGTGCCTGAGAGTCCATAGCTTCTGGAC5260.11683436618466939No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5050.11216987627995824No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4950.10994869061104817No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4920.10928233491037515No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4530.1006197108016259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)