FastQCFastQC Report
Wed 8 May 2024
EGAF00007959851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450210
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16170.35916572266275737No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15930.3538348770573732No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT15080.33495479887163765No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12960.2878656626907443No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12130.2694298216387908No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10290.2285600053308456No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8600.19102196752626552No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7770.17258612647431198No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7240.16081384242908867No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7190.1597032495946336No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7100.15770418249261456No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6770.15037426978521135No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6770.15037426978521135No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG6260.13904622287377No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6120.13593656293729592No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5970.1326047844339308No Hit
AGCGATGAAGATGAATCCGGTCGCCCGCGTC5480.12172097465627152No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5420.12038826325492548No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5370.11927767042047045No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5220.11594589191710535No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT4850.10772750494213812No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC4600.10217454076986296No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4570.10150818506918992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)