FastQCFastQC Report
Wed 8 May 2024
EGAF00007959852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426248
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13310.31225952966348225No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC11920.2796494059796175No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11410.2676845404553218No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8860.2078602128338432No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7490.1757192995626959No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG7230.16961956419736865No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7110.1668043017210638No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7050.16539667048291135No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6410.15038193727595203No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6190.14522062273605976No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6150.1442822019106248No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5880.13794786133893883No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5770.1353672040689927No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC5610.13161352076725286No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5360.12574839060828438No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5220.12246391771926202No Hit
GTCTTCAGACGGGTACGGTGCCTGAGAGTCCATAGCTTCTGGAC5100.11964865524295716No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4890.11472194590942363No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4820.11307970946491244No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4560.1069799740995852No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG4450.1043993168296391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)