FastQCFastQC Report
Wed 8 May 2024
EGAF00007959853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426248
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40470.9494472701338188No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15610.36621872712599235No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15040.35284623036354423No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14100.3307933409658227No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11650.2733150654079315No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11440.268388356074398No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8860.2078602128338432No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7630.17900377245171825No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7380.17313864229274975No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7160.16797732775285748No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6580.1543702257840506No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6410.15038193727595203No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6190.14522062273605976No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5990.14052851860888496No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG5530.12973667911638295No Hit
AGCGATGAAGATGAATCCGGTCGCCCGCGTC5360.12574839060828438No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5300.12434075937013195No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5100.11964865524295716No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC4920.11542576152849984No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG4920.11542576152849984No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4920.11542576152849984No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4690.11002984178224884No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4310.10111484394061673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)