FastQCFastQC Report
Wed 8 May 2024
EGAF00007959854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454962
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13960.3068388129118476No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13090.2877163367490032No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12930.28419955952365256No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10140.2228757566565999No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8050.17693785415045651No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG7290.16023316233004073No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7270.1597935651768719No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6890.15144121926666404No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6800.14946303207740425No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6760.1485838377710666No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6280.13803350609501452No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6160.13539592317600152No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6080.13363753456332617No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5680.12484559149994945No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5640.12396639719361177No Hit
GTCTTCAGACGGGTACGGTGCCTGAGAGTCCATAGCTTCTGGAC5600.12308720288727411No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC5240.11517445413023505No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5130.11275666978780646No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC5130.11275666978780646No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5070.11143787832829995No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4850.10660230964344275No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4830.10616271249027391No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG4820.10594291391368948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)