FastQCFastQC Report
Wed 8 May 2024
EGAF00007959855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454962
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16330.35893107556235465No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15680.3446441680843675No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14830.32596128907469196No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13260.2914529125509383No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12720.2795837894153797No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10280.22595293672878175No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8970.197159323196223No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7930.1743002712314435No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7510.16506873101489794No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7380.16221134951930052No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7200.158254975140781No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6650.146166053428638No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6440.14155028332036523No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6120.13451672886966384No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG6050.13297813883357293No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5990.1316593473740664No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5900.12968116018480666No Hit
AGCGATGAAGATGAATCCGGTCGCCCGCGTC5830.12814257014871572No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5660.12440599434678061No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5450.11979022423850784No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC5290.11627344701315714No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5100.1120972740580532No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5060.11121807975171553No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4910.10792110110294925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)