FastQCFastQC Report
Wed 8 May 2024
EGAF00007959856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431202
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13500.3130783252396789No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12280.2847853210328338No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12020.2787556643985881No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9400.21799527831503565No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7680.1781067805807951No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6750.15653916261983944No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG6680.15491579352600407No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6570.15236478494997704No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6430.1491180467623063No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6420.1488861368917584No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6270.14540748883353974No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6020.13960974206984197No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5960.13821828284655452No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC5920.13729064336436286No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5880.13636300388217124No Hit
GTCTTCAGACGGGTACGGTGCCTGAGAGTCCATAGCTTCTGGAC5680.131724806471213No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5360.12430369061367989No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4820.11178055760409275No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4720.10946145889861364No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4540.10528708122875127No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG4390.1018084331705326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)