FastQCFastQC Report
Wed 8 May 2024
EGAF00007959857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431202
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37020.8585303407683638No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15170.35180727362117986No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14880.34508188737529044No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT13960.3237461792848827No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12050.2794513940102319No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11930.276668475563657No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9110.21126989206914623No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6890.15978590080751018No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA6740.15630725274929153No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6660.15445197378490821No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6590.15282860469107284No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6480.15027759611504585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6420.1488861368917584No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6330.1467989480568272No Hit
AGCGATGAAGATGAATCCGGTCGCCCGCGTC5810.13473963478833587No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5800.13450772491778795No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG5610.13010143737737764No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5490.12731851893080273No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5280.12244841164929662No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4820.11178055760409275No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC4770.11062100825135318No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT4700.10899763915751783No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4340.10064888381779305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)