FastQCFastQC Report
Wed 8 May 2024
EGAF00007959859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430390
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10460.24303538650990963No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9110.21166848672134575No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6990.16241083668300843No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5310.12337647250168451No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC4570.1061827644694347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)