FastQCFastQC Report
Wed 8 May 2024
EGAF00007959861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405586
Total Bases12.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40591.0007741884581816No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10020.2470499474833944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6990.17234322683721826No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC4670.11514204139196126No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4570.11267647305380363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)