FastQCFastQC Report
Wed 8 May 2024
EGAF00007959863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435295
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9650.22168873982012197No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8880.2039995864873247No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7480.17183748951860234No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5530.12704028302645332No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC4820.11072950527802984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)