FastQCFastQC Report
Wed 8 May 2024
EGAF00007959865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412865
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37590.9104671018371622No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9750.2361546752570453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7500.18165744250541943No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4690.1135964540467223No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC4520.10947888534993278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)