FastQCFastQC Report
Wed 8 May 2024
EGAF00007959867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438603
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37160.847235427026263No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14780.33697899923165137No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13930.3175992868265835No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9430.21500080938798866No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7510.17122545901418823No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7240.16506955036787255No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6980.15914163833808706No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6820.1554936924736037No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6110.13930593269995872No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5560.12676611879079716No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4890.11149034548327302No Hit
GATGGTGAACGTAACAACCAGGTTCTGGAAG4420.10077450450635313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)