FastQCFastQC Report
Wed 8 May 2024
EGAF00007959868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415829
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15610.37539469349179594No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14630.3518273136313244No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG13320.32032397932804113No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9290.22340914173855117No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7180.17266712999814826No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG6690.16088344006791253No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6370.1531879690930647No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6100.14669491545803684No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5520.13274687431612514No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5370.1291396222966652No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG4330.10412934162840974No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4220.10148402348080582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)