FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415829
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40270.9684269254910071No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35320.8493876088488297No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12970.3119070579493013No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12690.30517352084630944No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7590.18252695218467205No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6780.1630477912795885No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6440.15487135336881266No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6310.15174506828528073No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5870.14116379569486495No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5310.12769672148888125No Hit
GATGGTGAACGTAACAACCAGGTTCTGGAAG4490.10797707711583367No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4390.10557224243619373No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4260.10244595735266178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)