FastQCFastQC Report
Wed 8 May 2024
EGAF00007959870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443783
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16810.37878873233089144No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15570.35084714826841046No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14290.3220042227845591No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9300.20956188046860738No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG7780.17531090645653394No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7360.16584682153214522No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6730.15165069414556212No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6450.14534130419596966No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5670.12776514647924775No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5340.12032907975294233No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG4630.10433026952361853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)