FastQCFastQC Report
Wed 8 May 2024
EGAF00007959871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443783
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35660.803545877151671No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14360.3235815702719573No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12750.2873025780618005No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9240.2082098683365519No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8080.1820709671168116No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7500.16900151650694145No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7490.16877618115159887No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6900.15548139518638612No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5890.1327225242967847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5350.12055441510828492No Hit
GATGGTGAACGTAACAACCAGGTTCTGGAAG4880.10996365340718323No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4690.10568228165567406No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4590.10342892810224816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)