FastQCFastQC Report
Wed 8 May 2024
EGAF00007959872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421177
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15950.37870064129807657No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15600.37039059587774265No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG13240.31435714675777643No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9040.21463660171376878No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG7570.17973441094836612No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7200.17094950578972737No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6060.14388250070635386No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5890.13984619293076309No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5330.12655012025822873No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5260.12488811117416193No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG4400.10446914242705561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)