FastQCFastQC Report
Wed 8 May 2024
EGAF00007959873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421177
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38070.9038955118631835No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35710.8478620627432172No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13060.3100834091130332No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12050.28610299232864095No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7720.1832958589856521No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7240.17189922526633694No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6750.1602651616778694No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6310.14981824743516384No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5630.13367301633280068No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5150.12227638261348554No Hit
GATGGTGAACGTAACAACCAGGTTCTGGAAG4390.1042317125579032No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4250.10090769438976961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)