FastQCFastQC Report
Wed 8 May 2024
EGAF00007959879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460567
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16130.35022048909279213No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9190.19953665807580656No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5710.12397761889149678No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4850.10530498277123632No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4680.10161388028234764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)