FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412449
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT70561.7107569663158355No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA44171.0709202834774725No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38820.9412072765360081No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22330.5414002700939995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20430.49533396856338596No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA15310.37119740864931183No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA14550.3527708880370664No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14430.34986143741408027No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA12650.30670458650645294No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12080.2928846960472689No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTA11570.2805195308995779No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11360.27542799230935217No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10840.26282037294307903No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10820.26233546450591466No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9310.22572487750000605No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9200.2230578810956021No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC9030.21893615937970515No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8210.19905491345596665No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8080.19590300861439838No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7830.189841653149844No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC7780.1886293820569331No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7260.17602176269065994No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6990.16947549878894116No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6790.16462641441729764No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC6510.15783769629699673No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6360.1542008830182641No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6110.14813952755370968No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5980.14498762271214138No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5820.14110835521482656No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5520.13383472865736126No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5270.12777337319280685No Hit
TCCCAGGAAATCACCTTCGTTTACGAGAAAA5140.12462146835123858No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5110.12389410569549206No Hit
AACACTTCTAGCGGTCAGACCCAATCTACCA4610.11177139476638324No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG4440.10764967305048624No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4290.1040128597717536No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA4240.10280058867884272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)