FastQCFastQC Report
Wed 8 May 2024
EGAF00007959887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439985
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT72961.6582383490346262No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA49141.1168562564632885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24790.5634282986920008No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22400.5091082650544905No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA16130.3666034069343273No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG15830.35978499267020464No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA15670.3561485050626726No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14120.3209200313647056No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA13390.30432855665534053No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12370.2811459481573235No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG12160.2763730581724377No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11970.2720547291384934No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTA11860.2695546439083151No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10060.22864415832357923No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9850.22387126833869336No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC9530.2165982931236292No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC9070.2061433912519745No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8970.20387058649726694No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8950.20341602554632543No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8840.20091594031614715No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8570.19477936747843677No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA7600.17273316135777356No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7230.16432378376535564No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7150.1625055399615896No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6990.15886905235405752No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6870.15614168664840847No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC6640.1509142357125811No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6550.14886871143334432No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6520.14818687000693206No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5960.1354591633805698No Hit
AACACTTCTAGCGGTCAGACCCAATCTACCA5660.12864074911644716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5630.1279589076900349No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5170.11750400581838018No Hit
TCCCAGGAAATCACCTTCGTTTACGAGAAAA4800.10909462822596225No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG4770.10841278679954998No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4770.10841278679954998No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4610.1047762991920179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)